Table of Contents

Spatialize Phylogenetic Tree

Description

This function spatialize phylogenetic tree by interpolates values of phylogenetic distance on the map.

Inputs

Name Type Description
Input Occurences csv file Csv file with species occurences (colunms sp, x, y).
Input Phylogenetic Tree tre file Filogenetic tree in format “.tre”
Input Mask Map Filename Type The filename of the shape of area of study.
Output folder Folder Folder to save outputs.
The Tree has branch lengths Boolean Value Type Choose the tipe of phylogentic tree
Rounds Of Nmds Search Real Value Type Value of Maximum numbers of random starts in search
Spline Interpolation Boolean Value Type Interpolate results by Spline
Kriging Interpolation Boolean Value Type Interpolate results by Kriging
Number Of Axis Real Value Type Define number of axis in NMDS analysis
Cell Size Real Value Type Cell size of output raster
Spline Lambda Real Value Type Smoothing parameter the ratio of error and process variance in spline interpolation
Smooth Factor Of Spline Real Value Type Number of neighboring pixels in smooth
Model In Kriging Interpolation Real Value Type Specification of the variogram model: 1- spherical, 2- exponential, 3- gaussian
Lags In Kriging Interpolation Real Value Type Number of lags
Smooth Factor Of Kriging Real Value Type Number of neighboring pixels in smooth
Classify Spline Boolean Value Type Classify areas by unsupervised classification
Number Of Classes Of Spline Real Value Type Number of classes in classification
Spline Interpolation Boolean Value Type Interpolate results by Spline
Classify Kriging Real Value Type Classify areas by unsupervised classification

Group

BioDinamica

Internal Name

BioDinamica